miRBase entry: tca-mir-3890

Stem-loop tca-mir-3890


Accession
MI0016387
Description
Tribolium castaneum tca-mir-3890 precursor miRNA


Sequence

cacccuguaguuauaacaugggaucgaaaauauacugaauuagaGCAGCUGUAUCUGCGGAACuuuaguuacauuuuAGCCGGUUAUGUACGGCUGcacuuuuaaaguuauguugucuuauguugguuuuacacacau
.....(((((...(((((((((((....((((((((.....((.((((((((((...(((..((..(((...)))..))))).....)))))))))).)).....)).)))))))))))))))))...))))).....

Structure
caccc     uua           cgaa      -  gaauu  a          --CUG   AA  uu   u 
     uguag   uaacaugggau    aauaua cu     ag GCAGCUGUAU     CGG  Cu  agu  
     |||||   |||||||||||    |||||| ||     || ||||||||||     |||  ||  ||| a
     acauu   guuguauucug    uuguau ga     uc cGUCGGCAUG     GCC  GA  uua  
uacac     uug           ----      u  aauuu  a          UAUUG   --  uu   c 


Annotation confidence Not enough data
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Genome context
ChLG3: 17788978-17789115 [-]

Database links

Mature tca-miR-3890-5p

Accession MIMAT0018878
Description Tribolium castaneum tca-miR-3890-5p mature miRNA
Sequence 45 - GCAGCUGUAUCUGCGGAAC - 63
Evidence experimental
SOLID [1]

Mature tca-miR-3890-3p

Accession MIMAT0018879
Description Tribolium castaneum tca-miR-3890-3p mature miRNA
Sequence 78 - AGCCGGUUAUGUACGGCUG - 96
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696