miRBase entry: tca-mir-309b

Stem-loop tca-mir-309b

Accession

MI0016391

Description

Tribolium castaneum tca-mir-309b precursor miRNA

Literature search

2 open access papers mention tca-mir-309b
(15 sentences)

Sequence

cauuugcccaucacaucuCGACUAACUCGAUUCAGUUGauguuaauuagauaUCACUGGGUUGAGUUUGUCUcgauguuuugugcccauc
.....((.((..(((((..(((.(((((((((((((.((((((.....))))))))))))))))))).)))..)))))..)).)).....

Structure

cauuu  c  uc     uC   U             U      a 
     gc ca  acauc  GAC AACUCGAUUCAGU Gauguu a
     || ||  |||||  ||| ||||||||||||| |||||| u
     cg gu  uguag  CUG UUGAGUUGGGUCA CUauag u
cuacc  u  uu     cU   U             -      a

Annotation confidence Not enough data

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Genome context

ChLG5: 7175766-7175855 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from tca-mir-309b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-309b-5p

Accession	MIMAT0018886
Description	Tribolium castaneum tca-miR-309b-5p mature miRNA
Sequence	19 - CGACUAACUCGAUUCAGUUG - 38
Evidence	experimental SOLID [1]

Mature tca-miR-309b-3p

Accession	MIMAT0018887
Description	Tribolium castaneum tca-miR-309b-3p mature miRNA
Sequence	53 - UCACUGGGUUGAGUUUGUCU - 72
Evidence	experimental SOLID [1]
Database links

References

PubMed ID: 20817720
Functional shifts in insect microRNA evolution
"Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
"Genome Biol Evol (2010) 2:686-696