miRBase entry: tca-mir-193

Stem-loop tca-mir-193


Accession
MI0016396
Description
Tribolium castaneum tca-mir-193 precursor miRNA

Literature search
1 open access papers mention tca-mir-193
(1 sentences)

Sequence

gcaaacuggucguaaugguuUGGGCCUUAUAGGUUCAGUUGaucauuuuuaaagcUACUGGCCUGUUAAGUCCCAAGUuauuacauugccggaagcu
((...(((((.(((((((((((((.(((((((((.((((.................))))))))).)))).)))))))))))))...)))))..)).

Structure
-  aaa     --c             C    -     U    UGaucau 
 gc   cuggu   guaaugguuUGGG CUUA UAGGU CAGU       u
 ||   |||||   ||||||||||||| |||| ||||| ||||       u
 cg   ggccg   cauuauUGAACCC GAAU GUCCG GUCA       u
u  -aa     uua             U    U     -    Ucgaaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLG8: 4707070-4707166 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-193
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-193-5p

Accession MIMAT0018896
Description Tribolium castaneum tca-miR-193-5p mature miRNA
Sequence 21 - UGGGCCUUAUAGGUUCAGUUG - 41
Evidence experimental
SOLID [1]

Mature tca-miR-193-3p

Accession MIMAT0018897
Description Tribolium castaneum tca-miR-193-3p mature miRNA
Sequence 56 - UACUGGCCUGUUAAGUCCCAAGU - 78
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696