miRBase entry: tca-mir-3897

Stem-loop tca-mir-3897


Accession
MI0016397
Description
Tribolium castaneum tca-mir-3897 precursor miRNA


Sequence

caaaaguguuuacuuCACUCUCGCCUUCGCCGGCAuggcgcugauggccgcCGUGGUGGUGGGGGUGGGGguggcacggcgc
.....(((((....((((((((((((((((((.(((((((((...)).))))))).))))))))))))))))))...)))))

Structure
caaaa     uacu                  G       -  g 
     guguu    uCACUCUCGCCUUCGCCG CAuggcg cu  
     |||||    |||||||||||||||||| ||||||| || a
     cgcgg    ggugGGGGUGGGGGUGGU GUGCcgc gg  
-----     -cac                  G       c  u 


Annotation confidence Not enough data
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Genome context
ChLG4: 554633-554714 [-]

Database links

Mature tca-miR-3897-5p

Accession MIMAT0018898
Description Tribolium castaneum tca-miR-3897-5p mature miRNA
Sequence 16 - CACUCUCGCCUUCGCCGGCA - 35
Evidence experimental
SOLID [1]

Mature tca-miR-3897-3p

Accession MIMAT0018899
Description Tribolium castaneum tca-miR-3897-3p mature miRNA
Sequence 52 - CGUGGUGGUGGGGGUGGGG - 70
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696