miRBase entry: tca-mir-3901

Stem-loop tca-mir-3901


Accession
MI0016401
Description
Tribolium castaneum tca-mir-3901 precursor miRNA


Sequence

cuuaugugcuaagCAUUUUGAUUUUAUGAGUCaaaaaucuaauaaaacgauauuuguaauaaauugacuucguuaucuuuguauuuuuuauuauuuuuuCAUUUAUAUUUCAAUUACGUuuucacuaaau
.....(((..((((...((((...(((((((.(((((..((((((((.(((((..(((((...........)))))....))))))))))))).))))).)))))))..))))....)))).))).....

Structure
cuuau   cu    -AUU    UUU       C     uc        c     --uu     aaau 
     gug  aagC    UUGA   UAUGAGU aaaaa  uaauaaaa gauau    guaau    u
     |||  ||||    ||||   ||||||| |||||  |||||||| |||||    |||||    g
     cac  uuUG    AACU   AUAUUUA uuuuu  auuauuuu uuaug    uauug    a
uaaau   -u    CAUU    -UU       C     -u        -     uuuc     cuuc 


Annotation confidence Not enough data
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Genome context
ChLG9: 12320608-12320737 [-]

Database links

Mature tca-miR-3901-5p

Accession MIMAT0018906
Description Tribolium castaneum tca-miR-3901-5p mature miRNA
Sequence 14 - CAUUUUGAUUUUAUGAGUC - 32
Evidence experimental
SOLID [1]

Mature tca-miR-3901-3p

Accession MIMAT0018907
Description Tribolium castaneum tca-miR-3901-3p mature miRNA
Sequence 100 - CAUUUAUAUUUCAAUUACGU - 119
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696