Stem-loop sequence hsa-mir-3180-5

Accession MI0016409
Description Homo sapiens miR-3180-5 stem-loop
Gene family MIPF0000894; mir-3180
Stem-loop 
          --a       u    -c     aac   ---u     g a  u         cc      g    - g    
gcuccgcccc   cgucgca gcgc  ccggg   gcg    ggggc g gc uccggaggc  cgcccu cugc c acc 
||||||||||   ||||||| ||||  |||||   |||    ||||| | || |||||||||  |||||| |||| | || c
cgaggcgggg   gcggugu cgcg  ggccc   cgc    cccug c cg aggccuccg  guggga ggcg g ugu 
          gaa       -    cu     ggu   uacu     a -  u         aa      -    a g
Get sequence
Deep sequencing
2740 reads, 12 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr16: 2185978-2186130 [-]
intergenic
Clustered miRNAs
< 10kb from hsa-mir-3180-5
hsa-mir-3180-5 chr16: 2185978-2186130 [-]
hsa-mir-4516 chr16: 2183120-2183205 [+]
Database links

Mature sequence hsa-miR-3180

Accession MIMAT0018178
Sequence

36 -  

uggggcggagcuuccggag

 - 54

Get sequence
Deep sequencing 5474 reads, 11 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).