Stem-loop sequence hsa-mir-3913-2

Accession

MI0016418

Description

Homo sapiens miR-3913-2 stem-loop

Gene family

MIPF0001134; mir-3913

Stem-loop

u  c                                            g 
 gu uauaauaaacugaaauauuugggacugaucuugaugucugccaa g
 || ||||||||||||||||||||||||||||||||||||||||||||  
 ca auauuauuugacuuuauaaacccugacuagaacuacagacgguu u
a  a                                            u 

Deep sequencing

23 reads, 12 experiments

Genome context

• Coordinates (GRCh37.p5): chr12: 69978503-69978602 [+]
• Overlapping transcripts:

  antisense

  ENST00000577744 ; MIR3913-2-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-3913-2

• hsa-mir-3913-1: chr12: 69978502-69978603 [-]
• hsa-mir-3913-2: chr12: 69978503-69978602 [+]

Database links

• ENTREZGENE: 100500868;MIR3913-2

Mature sequence hsa-miR-3913-5p

• Accession: MIMAT0018187
• Previous IDs: hsa-miR-3913
• Sequence: 22 - uuugggacugaucuugaugucu - 43
• Deep sequencing: 38 reads, 11 experiments
• Evidence: experimental; Solexa [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3913-5p
  • MIRDB:hsa-miR-3913-5p
  • RNA22-HSA:hsa-miR-3913-5p
  • TARGETMINER:hsa-miR-3913-5p

Mature sequence hsa-miR-3913-3p

• Accession: MIMAT0019225
• Sequence: 58 - agacaucaagaucagucccaaa - 79
• Deep sequencing: 6 reads, 3 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-3913-3p
  • MIRDB:hsa-miR-3913-3p
  • TARGETMINER:hsa-miR-3913-3p

References

1. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).