miRBase entry: isc-mir-iab-4

Stem-loop isc-mir-iab-4


Accession
MI0016445
Description
Ixodes scapularis isc-mir-iab-4 precursor miRNA
Gene family
MIPF0000151; mir-iab-4


Sequence

gauucgcggcgccucccguUCGUAUACUGAGUGUAUCCUGAguguuuaauuuuccgguauaccuucaguauacguaacgggggacccggagaaugcgcgga
.((((.(((.(.(((((((((((((((((((.((((((.(((.........))).)).)))).))))))))))).)))))))).))))..)))).......

Structure
------g    -g   c c        -           U    -  U   ugu 
       auuc  cgg g cucccguU CGUAUACUGAG GUAU CC GAg   u
       ||||  ||| | |||||||| ||||||||||| |||| || |||   u
       uaag  gcc c gggggcaa gcauaugacuu caua gg cuu   a
aggcgcg    ag   - a        u           c    u  c   uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature isc-miR-iab-4

Accession MIMAT0018921
Description Ixodes scapularis isc-miR-iab-4 mature miRNA
Sequence 20 - UCGUAUACUGAGUGUAUCCUGA - 41
Evidence not_experimental

References

  1. PubMed ID: 20702459
    A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata
    "Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ"
    "Proc Biol Sci (2011) 278:298-306