miRBase entry: dpu-mir-279b

Stem-loop dpu-mir-279b


Accession
MI0016447
Description
Daphnia pulex dpu-mir-279b precursor miRNA

Literature search
1 open access papers mention dpu-mir-279b
(2 sentences)

Sequence

aucuugagcauacgucagucggcgaguucgguuuuaguuguauuuuaaauuuagucgguaUGACUAGAACCCACACUCGUCCGGuugcuguauucuauuuc
......((.(((((.((((((((((((..(((((((((((((((............)))))))))))))))...))))).))))))).))))).)).....

Structure
aucuug  c     u       -     -uc               uuaaa 
      ag auacg cagucgg cgagu   gguuuuaguuguauu     u
      || ||||| ||||||| |||||   |||||||||||||||      
      uc uaugu guuGGCC GCUCA   CCAAGAUCAGUaugg     u
-cuuua  u     c       U     CAC               cugau 


Annotation confidence Not enough data
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Genome context
GL732554.1: 68646-68746 [-]

Database links

Mature dpu-miR-279b

Accession MIMAT0018923
Description Daphnia pulex dpu-miR-279b mature miRNA
Sequence 61 - UGACUAGAACCCACACUCGUCCGG - 84
Evidence not_experimental

References

  1. PubMed ID: 20702459
    A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata
    "Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ"
    "Proc Biol Sci (2011) 278:298-306