miRBase entry: tae-MIR156

Stem-loop tae-MIR156


Accession
MI0016450
Description
Triticum aestivum tae-MIR156 precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
38 open access papers mention tae-MIR156
(322 sentences)

Sequence

77180 reads, 418 reads per million, 116 experiments
uccucucucucucucucucugcgugucgaccgucugcuguguccgaugggaucggucgggggcugcgguggaggguugaugauggugcgaauggcUGACAGAAGAGAGUGAGCACAcagcggcagacuacgucugguaaagaggacggauggaugcgaagagagauauagacgcagcugcuguugcgugcucacccucucucugucagcguuccgccaucaaucaaucuauccauccaucuccccuugccguucccaucgcuucgcagcucgacugcc
....................(((.(((((......((((((..((((((((.((((.(((((.((.(((((((((((((((((((((.(((((.((((((((((((.((((((((.(((((((((.((.((((((..........((........))..........)))))).))))))))))).)))))))).)))).)))))))))))))))))))).)))))))).))))))))...))))).)))).))))))))...)))))))))))))).

Structure
uccucucucucucucucucu   u     ccgucu      -uc        u    c     --c  c      -        -       c     g        -    A        A         a  a      guaaagagga  gau 
                    gcg gucga      gcugug   cgauggga cggu ggggg   ug ggugga ggguugau gauggug gaaug cUGACAGA AGAG GUGAGCAC cagcggcag cu cgucug          cg   g
                    ||| |||||      ||||||   |||||||| |||| |||||   || |||||| |||||||| ||||||| ||||| |||||||| |||| |||||||| ||||||||| || ||||||          ||    
                    cgu cagcu      cgacgc   gcuacccu gccg ucccc   ac cuaccu ucuaacua cuaccgc cuugc gacugucu ucuc cacucgug guugucguc ga gcagau          gc   g
-------------------c   -     ------      uuc        u    u     ucu  -      a        a       -     -        c    c        c         -  c      auagagagaa  gua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature tae-miR156

Accession MIMAT0018208
Description Triticum aestivum tae-miR156 mature miRNA
Sequence 96 - UGACAGAAGAGAGUGAGCACA - 116
Evidence not_experimental

References

  1. PubMed ID: 18521122
    Data mining for miRNAs and their targets in the Triticeae
    "Dryanova A, Zakharov A, Gulick PJ"
    "Genome (2008) 51:433-443