Stem-loop hvu-MIR168

Accession

MI0016457

Description

Hordeum vulgare hvu-MIR168 precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

13 open access papers mention hvu-MIR168
(56 sentences)

Sequence

guccgucgccgccgccucgggcUCGCUUGGUGCAGAUCGGGACccuccgcccgccccgacgggccgGAUCCCGCCUUGCACCAAGUGAAUcggagccggcgcagcg
...(((.((.((((.(((.((.(((((((((((((..(((((...((((((((......)))).)))))))))..))))))))))))).)).))).)))))).)))

Structure

guc   c  c    c   g  c             AU     Ccc    -    cc 
   cgu gc gccg cuc gg UCGCUUGGUGCAG  CGGGA   uccg cccg  c
   ||| || |||| ||| || |||||||||||||  |||||   |||| ||||   
   gcg cg cggc gag cU AGUGAACCACGUU  GCCCU   AGgc gggc  c
---   a  -    c   g  A             CC     ---    c    ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR168-5p

• Accession: MIMAT0018215
• Description: Hordeum vulgare hvu-miR168-5p mature miRNA
• Sequence: 23 - UCGCUUGGUGCAGAUCGGGAC - 43
• Evidence: not_experimental

Mature hvu-miR168-3p

• Accession: MIMAT0018216
• Description: Hordeum vulgare hvu-miR168-3p mature miRNA
• Sequence: 67 - GAUCCCGCCUUGCACCAAGUGAAU - 90
• Evidence: not_experimental

References

1. PubMed ID: 18521122
   Data mining for miRNAs and their targets in the Triticeae
   "Dryanova A, Zakharov A, Gulick PJ"
   "Genome (2008) 51:433-443


2. PubMed ID: 20676715
   Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
   "Kantar M, Unver T, Budak H"
   "Funct Integr Genomics (2010) 10:493-507


3. PubMed ID: 23324356
   Developmentally regulated expression and complex processing of barley pri-microRNAs
   Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z
   BMC Genomics (2013) 14:34