miRBase entry: hvu-MIR397a

Stem-loop hvu-MIR397a


Accession
MI0016465
Description
Hordeum vulgare hvu-MIR397a precursor miRNA
Gene family
MIPF0000120; MIR397

Literature search
4 open access papers mention hvu-MIR397a
(8 sentences)

Sequence

cgcagaggugCCGUUGAGUGCAGCGUUGAUGaaccguccggccauggcccguccgccuccaccgaggccggagcgguucaccggcgcugcacgcaaugacgccucugcuuucu
.(((((((((.(((((.(((((((((((.((((((((((((((.(((..............))).))))))).))))))).))))))))))).))))).))))))))).....

Structure
----c         C     A           A       -       a   cccguc 
     gcagaggug CGUUG GUGCAGCGUUG UGaaccg uccggcc ugg      c
     ||||||||| ||||| ||||||||||| ||||||| ||||||| |||       
     cgucuccgc guaac cacgucgcggc acuuggc aggccgg gcc      g
ucuuu         a     g           c       g       a   accucc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hvu-miR397a

Accession MIMAT0018224
Description Hordeum vulgare hvu-miR397a mature miRNA
Sequence 11 - CCGUUGAGUGCAGCGUUGAUG - 31
Evidence not_experimental

References

  1. PubMed ID: 18521122
    Data mining for miRNAs and their targets in the Triticeae
    "Dryanova A, Zakharov A, Gulick PJ"
    "Genome (2008) 51:433-443