miRBase entry: gma-MIR4362

Stem-loop gma-MIR4362


Accession
MI0016499
Description
Glycine max gma-MIR4362 precursor miRNA


Sequence

aacuuuuauaaaccaguguuuuuagucCCUUAGGACAGACGUCAUGUAGgaaacauugucaacaguguuugucccugaacauuuugguucaugaauguuuaaagcaaggguuuuuaggcccucaagacagacaugauuaacauuguuuccuacuuggcauuuguccugaggaacuaaaagcauugauuuuuaaaaguu
((((((((.(((.(((((((((((((.((((((((((((.((((.((((((((((.(((.((..(((((((((..(((((((((........))))))))).....((((((....))))))...)))))))))..)).))).)))))))))).)))).)))))))))))).))))))))))))).))).))))))))

Structure
        u   c             c            C    U          u   c  ca         ----------------------cc         ugg 
aacuuuua aaa caguguuuuuagu CCUUAGGACAGA GUCA GUAGgaaaca ugu aa  guguuuguc                        ugaacauuu   u
|||||||| ||| ||||||||||||| |||||||||||| |||| |||||||||| ||| ||  |||||||||                        |||||||||    
uugaaaau uuu guuacgaaaauca ggaguccuguuu cggu cauccuuugu aca uu  uacagacag                        auuuguaag   u
        u   a             a            a    u          u   a  ag         aacucccggauuuuugggaacgaa         uac 


Annotation confidence Not enough data
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Genome context
chr13: 36082340-36082537 [+]

Database links

Mature gma-miR4362

Accession MIMAT0018258
Description Glycine max gma-miR4362 mature miRNA
Sequence 28 - CCUUAGGACAGACGUCAUGUAG - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14