Stem-loop gma-MIR396d

Accession

MI0016503

Description

Glycine max gma-MIR396d precursor miRNA

Literature search

25 open access papers mention gma-MIR396d
(150 sentences)

Sequence

11873092 reads, 26169.0 reads per million, 178 experiments

ggucaugcuuUUCCACAGCUUUCUUGAACUUcuuaugcaucuuauaucucuccacuuccagcauuuuaagcccuagaaGCUCAAGAAAGCUGUGGGAGAauauggcaa
.((((((.(((((((((((((((((((.(((((...((...............................))...))))).))))))))))))))))))).))))))..

Structure

-g      c                   A     uau  aucuuauaucucuc 
  gucaug uuUUCCACAGCUUUCUUGA CUUcu   gc              c
  |||||| ||||||||||||||||||| |||||   ||              a
  cgguau AGAGGGUGUCGAAAGAACU Gaaga   cg              c
aa      a                   C     ucc  aauuuuacgaccuu 

Annotation confidence High

Genome context

chr17: 8782240-8782347 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR396d

Mature gma-miR396d-5p

• Accession: MIMAT0054094
• Description: Glycine max gma-miR396d-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUU - 31
• Evidence: experimental ; unknown

Mature gma-miR396d-3p

• Accession: MIMAT0018262
• Description: Glycine max gma-miR396d-3p mature miRNA
• Sequence: 79 - GCUCAAGAAAGCUGUGGGAGA - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14