Stem-loop gma-MIR1520m

Accession

MI0016534

Description

Glycine max gma-MIR1520m precursor miRNA

Literature search

2 open access papers mention gma-MIR1520m
(2 sentences)

Sequence

59871 reads, 143.0 reads per million, 178 experiments

UUCUUAUUGGAUGAUGACUGUuacgugccauguucugauuggaugucaacuccauaaaagaugaaaugaauuguuguuuucauuuaucAAUCAGAACAUGACAUGUGACAAUuaucauucaauaagaa
.((((((((((((((((.(((((((((.(((((((((((((((.......)))......((((((.((((........)))))))))))))))))))))).))))))))).)))))))))))))))).

Structure

U                C         c            ggaugucaacuccauaaaa      a    uug 
 UCUUAUUGGAUGAUGA UGUuacgug cauguucugauu                   gaugaa ugaa   u
 |||||||||||||||| ||||||||| ||||||||||||                   |||||| ||||    
 agaauaacuuacuauU ACAGUGUAC GUACAAGACUAA                   cuauuu acuu   u
a                A         A            -------------------      -    uug 

Annotation confidence Low

Genome context

chr4: 9565785-9565912 [-]

Mature gma-miR1520m-5p

• Accession: MIMAT0054122
• Description: Glycine max gma-miR1520m-5p mature miRNA
• Sequence: 1 - UUCUUAUUGGAUGAUGACUGU - 21
• Evidence: experimental ; unknown

Mature gma-miR1520m-3p

• Accession: MIMAT0018293
• Description: Glycine max gma-miR1520m-3p mature miRNA
• Sequence: 89 - AAUCAGAACAUGACAUGUGACAAU - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14