miRBase entry: gma-MIR4402

Stem-loop gma-MIR4402


Accession
MI0016561
Description
Glycine max gma-MIR4402 precursor miRNA


Sequence

cguuugaggcccauaauauguuaaaaugcucaaaauuaaaugaggaauccccuaacaaauauccaaaggggauuuagucaacucauuuuuccaaaaauaggauuuaagauuuuugccaggggauuccucauuuaauuucgaacauuuugACAUAUUAUGGGUCUCAGACGGACau
((((((((((((((((((((((((((((.((.(((((((((((((((((((((..((((.(((...((..(((...)))..))......(((.......))).....))).))))..))))))))))))))))))))).)).)))))))))))))))))))))))))))).....

Structure
-----                            c  a                     aa    u   ---------------------caa  gg   u 
     cguuugaggcccauaauauguuaaaaug uc aaauuaaaugaggaauccccu  caaa auc                        ag  gau  
     |||||||||||||||||||||||||||| || |||||||||||||||||||||  |||| |||                        ||  ||| u
     GCAGACUCUGGGUAUUAUACAguuuuac ag uuuaauuuacuccuuagggga  guuu uag                        uc  cug  
uaCAG                            a  c                     cc    u   aauuuaggauaaaaaccuuuuuac  aa   a 


Annotation confidence Not enough data
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Genome context
chr20: 44128634-44128808 [-]

Database links

Mature gma-miR4402

Accession MIMAT0018320
Description Glycine max gma-miR4402 mature miRNA
Sequence 150 - ACAUAUUAUGGGUCUCAGACGGAC - 173
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14