miRBase entry: gma-MIR172f

Stem-loop gma-MIR172f


Accession
MI0016574
Description
Glycine max gma-MIR172f precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
27 open access papers mention gma-MIR172f
(129 sentences)

Sequence

gcggauguagcaucaucaagauucacaugcaaacgcagguggugggugggacugugaugcaaucuaagugcuacugugccaaccaaagccauaggucuuuuggaagugAGAAUCUUGAUGAUGCUGCAucagc
((.(((((((((((((((((((((.(((((....))...((((.(((((.(((..(((...)))..))).)))))..)))).((((((((...)))..)))))..))).))))))))))))))))))))).))

Structure
  g                     a   -------------gcaaacgcagg    -g     g   gu   g 
gc gauguagcaucaucaagauuc cau                        uggu  ggugg acu  gau  
|| ||||||||||||||||||||| |||                        ||||  ||||| |||  ||| c
cg cuACGUCGUAGUAGUUCUAAG gug                        accg  ucauc uga  cua  
  a                     A   aagguuuucuggauaccgaaacca    ug     g   au   a 


Annotation confidence Not enough data
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Genome context
chr11: 26905395-26905527 [+]

Database links

Mature gma-miR172f

Accession MIMAT0018333
Description Glycine max gma-miR172f mature miRNA
Sequence 109 - AGAAUCUUGAUGAUGCUGCA - 128
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14