miRBase entry: gma-MIR4414a

Stem-loop gma-MIR4414a


Accession
MI0016583
Description
Glycine max gma-MIR4414a precursor miRNA
Gene family
MIPF0001299; MIR4414

Literature search
1 open access papers mention gma-MIR4414a
(1 sentences)

Sequence

acugaaacucAGCUGCUGACUCGUUGGCUCgagaguucaccauuaagauagauugauguucggcacucacgccauguaauuaagguggugugcuucugaUCCAACGAUGCGGGAGCUGCauucagucg
((((((...(((((.(((..(((((((.(((.((((.(((((((........(((((....(((......))).....)))))))))))).)))).))).)))))))..))).)))))..))))))..

Structure
--      acu     G   AC       C   a    u       aagauaga     -guuc   ac 
  acugaa   cAGCU CUG  UCGUUGG UCg gagu caccauu        uugau     ggc  u
  ||||||   ||||| |||  ||||||| ||| |||| |||||||        |||||     |||   
  ugacuu   GUCGA GGC  AGCAACC agu uucg guggugg        aauua     ccg  c
gc      -aC     G   GU       U   c    u       --------     augua   ca 


Annotation confidence Not enough data
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Genome context
chr20: 36756848-36756975 [+]

Database links

Mature gma-miR4414a-5p

Accession MIMAT0018342
Description Glycine max gma-miR4414a-5p mature miRNA
Sequence 11 - AGCUGCUGACUCGUUGGCUC - 30
Evidence experimental
Illumina [1]

Mature gma-miR4414a-3p

Accession MIMAT0032112
Description Glycine max gma-miR4414a-3p mature miRNA
Sequence 100 - UCCAACGAUGCGGGAGCUGC - 119
Evidence experimental
Illumina [2-3]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153

  3. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562