miRBase entry: ath-MIR3932a

Stem-loop ath-MIR3932a


Accession
MI0016587
Description
Arabidopsis thaliana ath-MIR3932a precursor miRNA
Gene family
MIPF0001159; MIR3932


Sequence

ugcucuucuaugucuucaucgucaucacaaauuucuucaaacuuaaauaucuuaaggaccuucaacggacuugauaauagagauuaacgAACUUUGUGAUGACAACGAAGauacagaggauca
((.((((((.(((((((...(((((((((((.(((......(((...((((..(((..((......)).)))))))...)))......))).)))))))))))...))))))).)))))).))

Structure
  c      a       auc           u   uucaaa   aaa    uu   ga  uu 
ug ucuucu ugucuuc   gucaucacaaa uuc      cuu   uauc  aag  cc  c
|| |||||| |||||||   ||||||||||| |||      |||   ||||  |||  ||   
ac aggaga auaGAAG   CAGUAGUGUUU AAg      gag   auag  uuc  gg  a
  u      c       CAA           C   caauua   aua    --   -a  ca 


Annotation confidence Not enough data
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Genome context
chr4: 2179000-2179122 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR3932a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR3932a

Accession MIMAT0018346
Description Arabidopsis thaliana ath-miR3932a mature miRNA
Sequence 90 - AACUUUGUGAUGACAACGAAG - 110
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20621980
    siRNAs from miRNA sites mediate DNA methylation of target genes
    "Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H"
    "Nucleic Acids Res (2010) 38:6883-6894