Stem-loop sequence hsa-mir-3936

Accession

MI0016592 (change log)

Symbol

HGNC:MIR3936

Description

Homo sapiens miR-3936 stem-loop

Stem-loop

   --a  a uc  a         --ca            g      caaau  ----    u 
5'    ug u  ag gcaucuguc    gugucugcugua aucccu     cc    gugu u
      || |  || |||||||||    |||||||||||| ||||||     ||    ||||  
3'    ac g  uc cguagacag    cguagacgguau ugggga     gg    cgca g
   acg  - gu  a         ccca            g      ---au  ucuu    g 

Deep sequencing

217 reads, 0 reads per million, 58 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr5: 132365490-132365599 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR3936
• HGNC:MIR3936
• RNAcentral:URS000075A25E_9606
• miRBase Tracker:MI0016592

Mature sequence hsa-miR-3936

• Accession: MIMAT0018351
• Sequence: 66 - uaagggguguauggcagaugca - 87
• Deep sequencing: 196 reads, 48 experiments
• Evidence: experimental; Illumina [1-3]
• Database links:
  • RNAcentral:URS000058DCD8_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3936
  • TargetScanVert:hsa-miR-3936
  • miRDB:hsa-miR-3936

References

1. PMID:20498841 "Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers" Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH PLoS One. 5:e10563(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).
3. PMID:21606961 "Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia" Schotte D, Akbari Moqadam F, Lange-Turenhout EA, Chen C, van Ijcken WF, Pieters R, den Boer ML Leukemia. 25:1389-1399(2011).