Stem-loop sequence hsa-mir-3944

Accession

MI0016601 (change log)

Symbol

HGNC:MIR3944

Description

Homo sapiens miR-3944 stem-loop

Stem-loop

   ---uccacccag             u u           -a       ------   c 
5'             caggcgcaggucc g gcagcaggcca  ccgagaa      gcg c
               ||||||||||||| | |||||||||||  |||||||      |||  
3'             guccguguccagg c cgucguccggu  ggcuuuu      ugc u
   gucguaauucua             c u           cg       acccuc   g 

Deep sequencing

305 reads, 10.6 reads per million, 66 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr10: 133371556-133371663 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR3944
• HGNC:MIR3944
• miRBase Tracker:MI0016601

Mature sequence hsa-miR-3944-5p

• Accession: MIMAT0019231
• Sequence: 23 - ugugcagcaggccaaccgaga - 43
• Deep sequencing: 149 reads, 42 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-3944-5p
  • TargetScanVert:hsa-miR-3944-5p
  • miRDB:hsa-miR-3944-5p

Mature sequence hsa-miR-3944-3p

• Accession: MIMAT0018360
• Previous IDs: hsa-miR-3944
• Sequence: 63 - uucgggcuggccugcugcuccgg - 85
• Deep sequencing: 149 reads, 37 experiments
• Evidence: experimental; Illumina [1-2]
• Predicted targets:
  • TargetMiner:hsa-miR-3944-3p
  • TargetScanVert:hsa-miR-3944-3p
  • miRDB:hsa-miR-3944-3p

References

1. PMID:20498841 "Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers" Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH PLoS One. 5:e10563(2010).
2. PMID:21199797 "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene" Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C Cancer Res. 71:78-86(2011).