miRBase entry: far-MIR171

Stem-loop far-MIR171


Accession
MI0016605
Description
Festuca arundinacea far-MIR171 precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

gagugcgauguuggcaugguucaaucaacaaucgaguggucucugcauagcuuccuugcuagcgugguggcaugcugcuuugcuugaucUGAUUGAGCCGUGCCAAUAUCgcaagcuuccugccuagccc
...((((((((((((((((((((((((...(((((((((.....((((.(((.((.((....)).)).)))))))....))))))))).)))))))))))))))))))))))).(((........)))..

Structure
--------------gag                        aca         ucucu    a   u  u  c 
                 ugcgauguuggcaugguucaauca   aucgagugg     gcau gcu cc ug u
                 ||||||||||||||||||||||||   |||||||||     |||| ||| || ||  
                 acgCUAUAACCGUGCCGAGUUAGU   uaguucguu     cgua cgg gg gc a
cccgauccguccuucga                        --c         -ucgu    -   u  u  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature far-miR171

Accession MIMAT0018364
Description Festuca arundinacea far-miR171 mature miRNA
Sequence 90 - UGAUUGAGCCGUGCCAAUAUC - 110
Evidence not_experimental

References

  1. PubMed ID: 20213187
    Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application
    "Unver T, Bakar M, Shearman RC, Budak H"
    "Mol Genet Genomics (2010) 283:397-413