miRBase entry: far-MIR1119

Stem-loop far-MIR1119


Accession
MI0016606
Description
Festuca arundinacea far-MIR1119 precursor miRNA
Gene family
MIPF0001156; MIR1119


Sequence

ccagcgagugagcucgcgagcgcggaggagcuggcucagcggcucagcgccucaugccagccgugccacgguggcagucggucguguguacuccuacgUGGCACGGCGUGAUGCUUAGUCAGccagcagaguggagugcuacuuuu
...((((.(((((((((....(((((((.(((((((....))).)))).)))).)))..(((((((((((..((.(((((......)).)))))..))))))))))))))).))))).)).))....(((((((....))))))).

Structure
--------------------cca  -  g     -    gagcgcggaggagcuggcucagcggcucagcgccucaugcca           gu  c   -  gu 
                       gc ga ugagc ucgc                                          gccgugccacg  gg agu cg  c
                       || || ||||| ||||                                          |||||||||||  || ||| ||   
                       cG CU AUUCG AGUG                                          CGGCACGGUgc  cc uca gu  g
uuuucaucgugaggugagacgac  A  G     U    ------------------------------------------           au  -   u  gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature far-miR1119

Accession MIMAT0018365
Description Festuca arundinacea far-miR1119 mature miRNA
Sequence 99 - UGGCACGGCGUGAUGCUUAGUCAG - 122
Evidence not_experimental

References

  1. PubMed ID: 20213187
    Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application
    "Unver T, Bakar M, Shearman RC, Budak H"
    "Mol Genet Genomics (2010) 283:397-413