miRBase entry: far-MIR1134

Stem-loop far-MIR1134


Accession
MI0016608
Description
Festuca arundinacea far-MIR1134 precursor miRNA


Sequence

acggcaaucccagcuucaacgggccggugccaggcgugccucccggcgaugcccaucggucgccgacgccuccuagcacgccagcuggcucacaaggugucucucccggcggCGACAACAACAACAAGAAGAAGAGaucaggucuggugcuggcuacuaccaucccggucucagucagugugguggcgcucaucucgcugggugccgugcugcucuuccgcaagaaaaacaacggguccg
((((((..((((((.......((((((((...((((((((....))).)))))))))))))((((((((((.(((((......)))))......)))))))......)))((((.(.((.(((....((....((((((.((..(((((........))))).)).))))))..))..))).)).)))))......))))))))))))..(((......)))..................

Structure
--------------------------------      au      uucaacgggccggugccaggcgugccucccggcgaugcccaucggucgccgacgccuccuagcacgccagcuggcucacaaggugucucucccggc    A A  A   ACAA  AGAA      a  uc     cug 
                                acggca  cccagc                                                                                                ggCG C AC ACA    GA    GAGauc gg  uggug   g
                                ||||||  ||||||                                                                                                |||| | || |||    ||    |||||| ||  |||||    
                                ugccgu  gggucg                                                                                                ucgc g ug ugu    cu    cucugg cc  accau   c
gccugggcaacaaaaagaacgccuucucgucg      --      ------------------------------------------------------------------------------------------cucuac    - g  g   --ga  --ga      c  -u     cau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature far-miR1134

Accession MIMAT0018367
Description Festuca arundinacea far-miR1134 mature miRNA
Sequence 113 - CGACAACAACAACAAGAAGAAGAG - 136
Evidence not_experimental

References

  1. PubMed ID: 20213187
    Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application
    "Unver T, Bakar M, Shearman RC, Budak H"
    "Mol Genet Genomics (2010) 283:397-413