Stem-loop far-MIR396

Accession

MI0016610

Description

Festuca arundinacea far-MIR396 precursor miRNA

Gene family

MIPF0000047; MIR396

Sequence

gcggccaugcucUCCACAGGCUUUCUUGAACUGugaacucgcgcgcgugcgccgccggccugcuacuucucgcuucgaucuugucugccuagcuuguucaugguucaagaaaguccuuggaaaacaugcccgccucucuccucuuccuccggcaauuccacacggaucca
((((.((((...((((..((((((((((((((((((((..((((....)))).((.(((..((....((.......))....))..)))..))..))))))))))))))))))))..))))...)))).))))..............((((...........))))....

Structure

-------------------------------------    c    cuc    CA                    ucgcgcgcgugcgcc  -c   cu  uacu  uc 
                                     gcgg caug   UCCA  GGCUUUCUUGAACUGugaac               gc  ggc  gc    uc  g
                                     |||| ||||   ||||  ||||||||||||||||||||               ||  |||  ||    ||  c
                                     cgcc guac   aggu  cugaaagaacuugguacuug               cg  ccg  ug    ag  u
accuaggcacaccuuaacggccuccuucuccucucuc    c    aaa    uc                    -------------uu  au   uc  uucu  cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature far-miR396

• Accession: MIMAT0018369
• Description: Festuca arundinacea far-miR396 mature miRNA
• Sequence: 13 - UCCACAGGCUUUCUUGAACUG - 33
• Evidence: not_experimental

References

1. PubMed ID: 20213187
   Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application
   "Unver T, Bakar M, Shearman RC, Budak H"
   "Mol Genet Genomics (2010) 283:397-413