miRBase entry: far-MIR169

Stem-loop far-MIR169


Accession
MI0016612
Description
Festuca arundinacea far-MIR169 precursor miRNA
Gene family
MIPF0000012; MIR169_1


Sequence

ggcacgagggcaaagccuuacauggcugcaagggccuuaccucugaUAGCCAAGGAUGACUUGCCUAugucuucuuccucccucagaugccuaauuagccuuggagguguggggucucaugggcagucaccuuggcuagccugaguggcu
(.(((..((((..((((......)))).(((((......))).)).(((((((((.(((((.(((((((.....((((.(((((.((.((.......)).)).)))).).))))...)))))))))))))))))))))))))..))).).

Structure
- g   ga    aaagccuuacauggcugcaagggccuuaccucuga         A     U       ucuuc    u -    a  u  cu 
 g cac  gggc                                   UAGCCAAGG UGACU GCCUAug     uucc c ccuc ga gc  a
 | |||  ||||                                   ||||||||| ||||| |||||||     |||| | |||| || ||  a
 c gug  uccg                                   aucgguucc acuga cggguac     gggg g ggag uu cg  u
u g   ag    -----------------------------------         -     -       --ucu    u u    g  c  au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature far-miR169

Accession MIMAT0018371
Description Festuca arundinacea far-miR169 mature miRNA
Sequence 47 - UAGCCAAGGAUGACUUGCCUA - 67
Evidence not_experimental

References

  1. PubMed ID: 20213187
    Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application
    "Unver T, Bakar M, Shearman RC, Budak H"
    "Mol Genet Genomics (2010) 283:397-413