miRBase entry: ssc-mir-30c-1

Stem-loop ssc-mir-30c-1


Accession
MI0016618
Description
Sus scrofa ssc-mir-30c-1 precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
17 open access papers mention ssc-mir-30c-1
(34 sentences)

Sequence

651 reads, 280 reads per million, 11 experiments
cguagugcgUGUAAACAUCCUACACUCUCAGCugugagcucgagguggCUGGGAGAGGGUUGUUUACUccuucugccaug
.((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))....

Structure
---c    ugc U       U   ACA         guga   c 
    guag   g GUAAACA CCU   CUCUCAGCu    gcu  
    ||||   | ||||||| |||   |||||||||    ||| g
    cguc   c CAUUUGU GGG   GAGGGUCgg    ugg  
guac    uuc U       U   --A         ----   a 


Annotation confidence Not enough data
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Genome context
chr6: 157473595-157473674 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-30c-5p

Accession MIMAT0002167
Description Sus scrofa ssc-miR-30c-5p mature miRNA
Sequence 10 - UGUAAACAUCCUACACUCUCAGC - 32
Evidence experimental
cloned [1], Illumina [2-3]

Mature ssc-miR-30c-1-3p

Accession MIMAT0022976
Description Sus scrofa ssc-miR-30c-1-3p mature miRNA
Sequence 49 - CUGGGAGAGGGUUGUUUACU - 68
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  3. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100