Stem-loop sequence ssc-mir-126

Accession

MI0016619 (change log)

Description

Sus scrofa miR-126 stem-loop

Gene family

MIPF0000115; mir-126

Literature search

23 open access papers mention ssc-mir-126
(87 sentences)

Stem-loop

         - a           u       c cug   c 
5' cgacgg g cauuauuacuu ugguacg g   uga a
   |||||| | ||||||||||| ||||||| |   |||  
3' gcuguc c guaauaaugag gccaugc c   acu c
         g -           u       u -aa   u 

Deep sequencing

68671 reads, 1.37e+04 reads per million, 15 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr1: 313734669-313734741 [+]
• Overlapping transcripts:

  sense

  ENSSSCT00000006406 ; EGFL7-201; intron 7

Database links

• EntrezGene:MIR126
• miRBase Tracker:MI0016619

Mature sequence ssc-miR-126-5p

• Accession: MIMAT0018377
• Previous IDs: ssc-miR-126*
• Sequence: 9 - cauuauuacuuuugguacgcg - 29
• Deep sequencing: 40058 reads, 15 experiments
• Evidence: experimental; cloned [1], Illumina [2]

Mature sequence ssc-miR-126-3p

• Accession: MIMAT0018378
• Previous IDs: ssc-miR-126
• Sequence: 46 - ucguaccgugaguaauaaugcg - 67
• Deep sequencing: 28592 reads, 15 experiments
• Evidence: experimental; cloned [1], Illumina [2]

References

1. PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).