Stem-loop sequence hsa-mir-550b-2

Accession MI0016687
Description Homo sapiens miR-550b-2 stem-loop
Gene family MIPF0000334; mir-550
Stem-loop 
------aga a  c     agau                  cacua    ac 
         g cu gcugg    gugccugagggaguaaga     ucug  a
         | || |||||    ||||||||||||||||||     ||||  a
         c ga cgacc    cacggacucccucauucu     ggac  c
acuacgaaa -  c     acgu                  ---cg    aa
Get sequence
Deep sequencing
8 reads, 6 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr7: 32772593-32772689 [-]
sense
OTTHUMT00000328640 ; AC018633.4-001; intron 3
OTTHUMT00000328640 ; AC018633.4-001; intron 3
OTTHUMT00000328640 ; AC018633.4-001; intron 3
ENST00000417811 ; AC018633.4-001; intron 3
ENST00000417811 ; AC018633.4-001; intron 3
ENST00000417811 ; AC018633.4-001; intron 3
antisense
ENST00000404479 ; AVL9-202; intron 10
ENST00000404479 ; AVL9-202; intron 10
ENST00000404479 ; AVL9-201; intron 10
Clustered miRNAs
< 10kb from hsa-mir-550b-2
hsa-mir-550b-2 chr7: 32772593-32772689 [-]
hsa-mir-550a-2 chr7: 32772593-32772689 [+]
Database links

Mature sequence hsa-miR-550b-2-5p

Accession MIMAT0022737
Sequence

16 -  

augugccugagggaguaagaca

 - 37

Get sequence
Deep sequencing 6 reads, 2 experiments
Evidence not experimental
Predicted targets

Mature sequence hsa-miR-550b-3p

Accession MIMAT0018445
Previous IDs hsa-miR-550b
Sequence

58 -  

ucuuacucccucaggcacug

 - 77

Get sequence
Deep sequencing 10 reads, 4 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).