miRBase entry: csi-MIR166c

Stem-loop csi-MIR166c


Accession
MI0016694
Description
Citrus sinensis csi-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
7 open access papers mention csi-MIR166c
(12 sentences)

Sequence

uuccuccucgaucauacaugaacgguugagGGGAAUGUUGUCUGGUUCGAGaucacucguggacgaauuaauuaauaacuuauugucuuuugaaugauuUCGGACCAGGCUUCAUUCCCcccaacucaguuuaauugc
..................((((((((((.((((((((..((((((((((((((((.(((.((((((................))))))..))).))))))))))))))))..)))))))).)))))..))))).....

Structure
uuccuccucgaucauaca     --     a        UU                c   -u      auuaauu 
                  ugaac  gguug gGGGAAUG  GUCUGGUUCGAGauca ucg  ggacga       a
                  |||||  ||||| ||||||||  |||||||||||||||| |||  ||||||        
                  auuug  ucaac cCCCUUAC  CGGACCAGGCUuuagu agu  ucuguu       a
-------------cguua     ac     c        UU                a   uu      auucaau 


Annotation confidence Not enough data
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Genome context
chr5: 32146390-32146527 [+]

Database links

Mature csi-miR166c-3p

Accession MIMAT0018451
Description Citrus sinensis csi-miR166c-3p mature miRNA
Sequence 100 - UCGGACCAGGCUUCAUUCCC - 119
Evidence experimental
Illumina [1-2]

Mature csi-miR166c-5p

Accession MIMAT0037393
Description Citrus sinensis csi-miR166c-5p mature miRNA
Sequence 31 - GGGAAUGUUGUCUGGUUCGAG - 51
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113