Stem-loop csi-MIR167c

Accession

MI0016696

Description

Citrus sinensis csi-MIR167c precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

4 open access papers mention csi-MIR167c
(5 sentences)

Sequence

uuugagagauUGAAGCUGCCAGCAUGAUCUGguaaucaaccuuuuuguauauauauauauauauuaauuccuuauaguuuuuagauuuaauuucuuuuaauuagauccaugguuucaauucuauugaauaaauggugggguuuuauauuuucgugcaauuauuaagaggauagauggaauagcgccuuuaaauccaaucacuuuuuuaguuuuauuuugaucuuuuuugcccccuaaaauuaaggguaaagguuaauaugugagagaguuuuagggugugauuuauuagcuucguagaugaaugguuccaucAGGUCAUCUUGCAGCUUCAAUuacucauu
..((((.((((((((((((.((.((((((((((.....)))....(((((((....))))))).(((..((((((........(((((((((......)))))))))(((...((((((...))))))...)))))))))..)))(((((((.............)))))))((((((((.(((((((.((((.(..((((...............((((((((...(((((...........)))))))))))))...))))..).)))).))))))).(((((((.((...)).))))))).))))))))))))))))).)))))))))))).))))..

Structure

uu    a            C  C       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   a 
  ugag gauUGAAGCUGC AG AUGAUCU                                                                                                                                                                                                                                                                               Ggu a
  |||| |||||||||||| || |||||||                                                                                                                                                                                                                                                                               ||| u
  acuc uUAACUUCGACG UC UACUGGA                                                                                                                                                                                                                                                                               cca c
uu    a            U  -       cuaccuugguaaguagaugcuucgauuauuuagugugggauuuugagagaguguauaauuggaaaugggaauuaaaaucccccguuuuuucuaguuuuauuuugauuuuuucacuaaccuaaauuuccgcgauaagguagauaggagaauuauuaacgugcuuuuauauuuuggggugguaaauaaguuaucuuaacuuugguaccuagauuaauuuucuuuaauuuagauuuuugauauuccuuaauuauauauauauauauauguuuuu   a 

Annotation confidence Not enough data

Genome context

chr2: 8234791-8235131 [+]

Mature csi-miR167c-5p

• Accession: MIMAT0018453
• Description: Citrus sinensis csi-miR167c-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR167c-3p

• Accession: MIMAT0037394
• Description: Citrus sinensis csi-miR167c-3p mature miRNA
• Sequence: 313 - AGGUCAUCUUGCAGCUUCAAU - 333
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113