Stem-loop csi-MIR171b

Accession

MI0016698

Description

Citrus sinensis csi-MIR171b precursor miRNA

Gene family

MIPF0000104; MIR171_2

Literature search

3 open access papers mention csi-MIR171b
(3 sentences)

Sequence

cauggagagcaaaagcaccuucuuggcgauuggagaaguagacauggUGUGAUAUUGGUUCGGCUCAUCuuaauuaauagauuaauauuucagcccuuaagguucuuacauguauauaucuagaCGAGCCGAAUCAAUAUCACUCuuguaugcuucuuucuuuugauu
((.((((.((....))..)))).)).(((..(((((((((.(((.((.((((((((((((((((((.(((........((((..((((...((((.....)))).......))))..))))))).)))))))))))))))))).))))).)))))).)))..)))...

Structure

cauggagagcaaaagcaccuucuugg   uu   -      g   u  U                  A   uaauuaau    ua    ----uuc    c 
                          cga  gga gaagua aca gg GUGAUAUUGGUUCGGCUC UCu        agau  auau       agcc u
                          |||  ||| |||||| ||| || |||||||||||||||||| |||        ||||  ||||       |||| u
                          guu  cuu cuucgu ugu uC CACUAUAACUAAGCCGAG aga        ucua  uaug       uugg a
-----------------------uua   uu   u      a   -  U                  C   --------    ua    uacauuc    a 

Annotation confidence Not enough data

Genome context

JH999127.1: 105690-105857 [+]

Mature csi-miR171b-3p

• Accession: MIMAT0018455
• Description: Citrus sinensis csi-miR171b-3p mature miRNA
• Sequence: 125 - CGAGCCGAAUCAAUAUCACUC - 145
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR171b-5p

• Accession: MIMAT0037396
• Description: Citrus sinensis csi-miR171b-5p mature miRNA
• Sequence: 48 - UGUGAUAUUGGUUCGGCUCAUC - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113