Stem-loop csi-MIR159d

Accession

MI0016702

Description

Citrus sinensis csi-MIR159d precursor miRNA

Gene family

MIPF0001104; MIR319

Literature search

5 open access papers mention csi-MIR159d
(28 sentences)

Sequence

ucgucucuuaauaaaauuugcgaaaaugguagaaauagggguuccuugcggcccaaaacaguuggcuaacucugcucuucucucuauguUUUGGACUGAAGGGAGCUCCUaauucuucucuuu
((((...............))))....((.((((.((((((((((((.(((.((((((((...(((.......)))..........)))))))).))).)))))))))))).)))).))....

Structure

ucgucucuuaauaaaauuugcgaaaau  u    a            g   c        -------guu   ua 
                           gg agaa uagggguuccuu cgg ccaaaaca          ggc  a
                           || |||| |||||||||||| ||| ||||||||          |||  c
                           uc ucuu aUCCUCGAGGGA GUC GGUUUugu          ucg  u
-----------------------uuuc  u    a            A   A        aucucucuuc   uc 

Annotation confidence Not enough data

Genome context

chr4: 17295819-17295941 [+]

Mature csi-miR159d

• Accession: MIMAT0018459
• Description: Citrus sinensis csi-miR159d mature miRNA
• Sequence: 90 - UUUGGACUGAAGGGAGCUCCU - 110
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113