Stem-loop csi-MIR396a

Accession

MI0016706

Description

Citrus sinensis csi-MIR396a precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention csi-MIR396a
(1 sentences)

Sequence

cgaagguccucuuugugaucUUCCACAGCUUUCUUGAACUGucuugaauuuuccgaucgauaccggugcaugauuaauucccaacacaAUUCAAGAAAGCUGUGGAAAAcuacuaagaggauuuggucaucaaucucucuuuugauagagauc
...((((((((((.(((...((((((((((((((((((.(((...(((((.((..((((....))))....))..))))).....))).))))))))))))))))))...))).))))))))))((((.((.(((........))).))))))

Structure

--------------------------cga          u   auc                  C   --cuu     -u  --cg    a 
                             agguccucuu gug   UUCCACAGCUUUCUUGAA UGu     gaauu  uc    aucg u
                             |||||||||| |||   |||||||||||||||||| |||     |||||  ||    ||||  
                             uuuaggagaa cau   AAGGUGUCGAAAGAACUU aca     cuuaa  ag    uggc a
cuagagauaguuuucucucuaacuacugg          u   cAA                  A   caacc     uu  uacg    c 

Annotation confidence Not enough data

Genome context

chr7: 3041218-3041370 [-]

Mature csi-miR396a-5p

• Accession: MIMAT0018463
• Description: Citrus sinensis csi-miR396a-5p mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUG - 41
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR396a-3p

• Accession: MIMAT0037398
• Description: Citrus sinensis csi-miR396a-3p mature miRNA
• Sequence: 89 - AUUCAAGAAAGCUGUGGAAAA - 109
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113