Stem-loop csi-MIR399a

Accession

MI0016712

Description

Citrus sinensis csi-MIR399a precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention csi-MIR399a
(12 sentences)

Sequence

cauugaggugcaugcaugcaguugcauauuacaGGGCAACAUCUCCAUUGGCAGGcugcauacuuauuacauccaucucauauauacguauguucuucagucagugugccuucUGCCAAAGGAGAUUUGCCCGGcaauuccucugcauuuauuuu
....((((((((((((......)))))......((((((.((((((.((((((((..(((((((.(((..........(((((....)))))......))).)))))))..)))))))).)))))))))))).)))...))))............

Structure

--------cauu    ---   augcaugcaguugcauauuaca      C      A        cu       u   acauccaucu     a 
            gagg   ugc                      GGGCAA AUCUCC UUGGCAGG  gcauacu auu          cauau u
            ||||   |||                      |||||| |||||| ||||||||  ||||||| |||          |||||  
            cucc   acG                      CCCGUU UAGAGG AACCGUcu  cguguga uga          guaug a
uuuuauuuacgu    uua   ---------------------G      -      A        uc       c   ----cuucuu     c 

Annotation confidence Not enough data

Genome context

chr2: 2292782-2292936 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR399a

Mature csi-miR399a-3p

• Accession: MIMAT0018469
• Description: Citrus sinensis csi-miR399a-3p mature miRNA
• Sequence: 114 - UGCCAAAGGAGAUUUGCCCGG - 134
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR399a-5p

• Accession: MIMAT0037403
• Description: Citrus sinensis csi-miR399a-5p mature miRNA
• Sequence: 34 - GGGCAACAUCUCCAUUGGCAGG - 55
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113