miRBase entry: csi-MIR399b

Stem-loop csi-MIR399b


Accession
MI0016713
Description
Citrus sinensis csi-MIR399b precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention csi-MIR399b
(12 sentences)

Sequence

gaagcaguaagcgauuuaguuguAGGGCUUCUCUCCUUUGGCAGgugauggccaagggcaaagaucauauaauauauuuauauauauggugccuauucuaauuauuguucuauuuuuucaaugaccUGCCAAAGGAGAGUUGCCCUAuaacugcuucagcuuuuaaauaa
(((((.(.((((.....(((((((((((..((((((((((((((((.........(((((....((((((((((....))).))))))))))))........(((((...........)))))))))))))))))))))..)))))))))))))))).))))).......

Structure
-------     a u    gauuu           UU                --------------------gauggccaa     aaga       -   u 
       gaagc g aagc     aguuguAGGGC  CUCUCCUUUGGCAGgu                             gggca    ucauaua aua a
       ||||| | ||||     |||||||||||  ||||||||||||||||                             |||||    ||||||| |||  
       uuucg c uucg     ucaauAUCCCG  GAGAGGAAACCGUcca                             uccgu    gguauau uau u
aauaaau     a -    -----           UU                guaacuuuuuuaucuuguuauuaaucuua     ----       a   u 


Annotation confidence Not enough data
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Genome context
chr5: 7022847-7023016 [-]

Database links

Mature csi-miR399b-3p

Accession MIMAT0018470
Description Citrus sinensis csi-miR399b-3p mature miRNA
Sequence 127 - UGCCAAAGGAGAGUUGCCCUA - 147
Evidence experimental
Illumina [1-2]

Mature csi-miR399b-5p

Accession MIMAT0037404
Description Citrus sinensis csi-miR399b-5p mature miRNA
Sequence 24 - AGGGCUUCUCUCCUUUGGCAG - 44
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113