Stem-loop csi-MIR530a

Accession

MI0016724

Description

Citrus sinensis csi-MIR530a precursor miRNA

Gene family

MIPF0000521; MIR530

Literature search

1 open access papers mention csi-MIR530a
(6 sentences)

Sequence

auuuaucUGCAUUUGCACCUGCACCUUGcugugcuguuaucuggguugacgaggaucaucaugaugaucagcuucaaaacucgaaagcaugaAGGUGCAGCUGUAUAUGCAGGugaaugcc
((((((((((((.((((.(((((((((...(((((......((((((((.(..((((((....))))))..).)))..)))))..))))).))))))))).)))).))))))))))))...

Structure

---            U    C         Gcu     guuauc     --   c ag      c 
   auuuaucUGCAU UGCA CUGCACCUU   gugcu      ugggu  uga g  gaucau a
   |||||||||||| |||| |||||||||   |||||      |||||  ||| |  ||||||  
   uaaguGGACGUA AUGU GACGUGGAa   uacga      gcuca  acu c  cuagua u
ccg            U    C         --g     ----aa     aa   u ga      g 

Annotation confidence Not enough data

Genome context

chr8: 18992462-18992582 [+]

Mature csi-miR530a-5p

• Accession: MIMAT0018482
• Description: Citrus sinensis csi-miR530a-5p mature miRNA
• Sequence: 8 - UGCAUUUGCACCUGCACCUUG - 28
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR530a-3p

• Accession: MIMAT0037412
• Description: Citrus sinensis csi-miR530a-3p mature miRNA
• Sequence: 93 - AGGUGCAGCUGUAUAUGCAGG - 113
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113