Stem-loop csi-MIR535a

Accession

MI0016726

Description

Citrus sinensis csi-MIR535a precursor miRNA

Gene family

MIPF0000136; MIR535

Literature search

2 open access papers mention csi-MIR535a
(5 sentences)

Sequence

auuuuuucuaaugaacauucuuuguugcaagguuuucugauuguauuguuacuuuuuugugcagauauauaauccuugcccaaacucaagacaacuuuguuUGACAAUGAGAGAGAGCACACccgucagcauucgugcaaa
........................(((((.((....(((((.(...((((.((((((((((((((((.......((((........)))).......)))))).).)))))))))))))...).)))))...)).))))).

Structure

auuuuuucuaaugaacauucuuug     a  uuuu     u uau    a         - -      uauaauc    ccc 
                        uugca gg    cugau g   uguu cuuuuuugu g cagaua       cuug   a
                        ||||| ||    ||||| |   |||| ||||||||| | ||||||       ||||    
                        aacgu cu    gacug c   ACGA GAGAGAGUA C GUuugu       gaac   a
-----------------------a     g  -uac     c CAC    -         A A      uucaaca    uca 

Annotation confidence Not enough data

Genome context

chr2: 14822032-14822172 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR535a

Mature csi-miR535a

• Accession: MIMAT0018484
• Description: Citrus sinensis csi-miR535a mature miRNA
• Sequence: 102 - UGACAAUGAGAGAGAGCACAC - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246