Stem-loop sequence hsa-mir-4477a

Accession

MI0016829 (change log)

Symbol

HGNC:MIR4477A

Description

Homo sapiens miR-4477a stem-loop

Gene family

MIPF0001274; mir-4477

Literature search

2 open access papers mention hsa-mir-4477a
(4 sentences)

Stem-loop

   u         auc                       uuu 
5'  ccuccuccc   aaucacaaauguccuuaauggca   a
    |||||||||   |||||||||||||||||||||||   a
3'  ggaggaggg   uuaguguuuacaggaauuaucgu   g
   u         cac                       uag 

Deep sequencing

174 reads, 3.64 reads per million, 55 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCh38; GCA_000001405.15)	Overlapping transcripts
chr9: 41233755-41233835 [+]	intergenic
chr9: 63819574-63819654 [-]	intergenic

Clustered miRNAs

< 10kb from hsa-mir-4477a

• hsa-mir-4477b: chr9: 41233755-41233835 [-]
• hsa-mir-4477a: chr9: 41233755-41233835 [+]
• hsa-mir-4477b: chr9: 63819574-63819654 [+]
• hsa-mir-4477a: chr9: 63819574-63819654 [-]

Database links

• EntrezGene:MIR4477A
• HGNC:MIR4477A
• miRBase Tracker:MI0016829

Mature sequence hsa-miR-4477a

• Accession: MIMAT0019004
• Sequence: 48 - cuauuaaggacauuugugauuc - 69
• Deep sequencing: 116 reads, 42 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4477a
  • TargetScanVert:hsa-miR-4477a
  • miRDB:hsa-miR-4477a

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).