Stem-loop sequence hsa-mir-4478

Accession

MI0016831 (change log)

Symbol

HGNC:MIR4478

Description

Homo sapiens miR-4478 stem-loop

Literature search

2 open access papers mention hsa-mir-4478
(4 sentences)

Stem-loop

        a     -  ---c     --a     caaac     -     
5' ggccg ggcug ag    ugagg   gccuc     cugua gaca 
   ||||| ||||| ||    |||||   |||||     ||||| ||| g
3' ccggu ccgac uc    acucc   cgggg     gacgu cugg 
        c     g  cccu     gag     aucau     a     

Deep sequencing

114 reads, 0 reads per million, 58 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr9: 122120082-122120167 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000055440 ; DBC1-001; intron 1

  OTTHUMT00000055441 ; DBC1-002; intron 1

  ENST00000265922 ; BRINP1-001; intron 1

  ENST00000373964 ; BRINP1-002; intron 1

Database links

• EntrezGene:MIR4478
• HGNC:MIR4478
• RNAcentral:URS000075CD73_9606
• miRBase Tracker:MI0016831

Mature sequence hsa-miR-4478

• Accession: MIMAT0019006
• Sequence: 5 - gaggcugagcugaggag - 21
• Deep sequencing: 113 reads, 57 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003FBC84_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4478
  • TargetScanVert:hsa-miR-4478
  • miRDB:hsa-miR-4478

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).