Stem-loop sequence hsa-mir-548x-2

Accession

MI0016833 (change log)

Symbol

HGNC:MIR548X2

Description

Homo sapiens miR-548x-2 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

41 open access papers mention hsa-mir-548x-2
(141 sentences)

Stem-loop

   au  -                  a          ug c           a 
5'   gc caaauauuagguuggcac aaaguaauug  g uuuugccauua a
     || |||||||||||||||||| ||||||||||  | |||||||||||  
3'   ug guuuauaauccaaccgug uuucauuaac  c aaaaugguaau a
   -g  u                  c          gu a           g 

Deep sequencing

6775 reads, 8.94 reads per million, 123 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr13: 65966330-65966429 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR548X2
• HGNC:MIR548X2
• RNAcentral:URS000075BEA9_9606
• miRBase Tracker:MI0016833

Mature sequence hsa-miR-548x-3p

• Accession: MIMAT0015081
• Previous IDs: hsa-miR-548x
• Sequence: 59 - uaaaaacugcaauuacuuuc - 78
• Deep sequencing: 4293 reads, 87 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000043D2C1_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548x-3p
  • TargetScanVert:hsa-miR-548x-3p
  • miRDB:hsa-miR-548x-3p
  • microrna.org:hsa-miR-548x-3p

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).