miRBase entry: hsa-mir-4539

Stem-loop hsa-mir-4539


Accession
MI0016910
Symbol
HGNC: MIR4539
Description
Homo sapiens hsa-mir-4539 precursor miRNA


Sequence

3 reads, 1 reads per million, 3 experiments
ugagcugagcucugcugugcugugcugagcagggcugaGCUGAACUGGGCUGAGCUGGGC
...(((.(((((.(((.......(((.(((...))).))).......))).))))).)))

Structure
uga   g     u   gugcugu   g   a 
   gcu agcuc gcu       gcu agc  
   ||| ||||| |||       ||| ||| g
   CGG UCGAG CGG       CGa ucg  
---   G     U   GUCAAGU   g   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr14: 105857513-105857572 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from hsa-mir-4539
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hsa-miR-4539

Accession MIMAT0019082
Description Homo sapiens hsa-miR-4539 mature miRNA
Sequence 39 - GCUGAACUGGGCUGAGCUGGGC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20733160
    Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs
    "Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI,"
    "Blood (2010) 116:e118-e127