Stem-loop sequence oar-mir-433

Accession

MI0016914 (change log)

Description

Ovis aries miR-433 stem-loop

Gene family

MIPF0000177; mir-433

Literature search

7 open access papers mention oar-mir-433
(11 sentences)

Stem-loop

   ----ac  a  g   gg      gua   u          uuguucagagaggcuagau 
5'       cc gu gcc  ggagaa   cgg gagccuguca                   c
         || || |||  ||||||   ||| ||||||||||                    
3'       gg cg ugg  ccucuu   gcu cucggguagu                   c
   caccac  -  a   -a      gug   c          acuaggaagaguuguuccu 

Deep sequencing

660 reads, 53.8 reads per million, 13 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Oar_v4.0; GCA_000298735.2): chr18: 64384195-64384308 [+]
• Overlapping transcripts:

  sense

  ENSOART00000025026 ; exon 1

  antisense

  ENSOART00000015109 ; oar-mir-136-201; exon 1

Clustered miRNAs

< 10kb from oar-mir-433

• oar-mir-665: chr18: 64379046-64379140 [+]
• oar-mir-431: chr18: 64383338-64383428 [+]
• oar-mir-433: chr18: 64384195-64384308 [+]
• oar-mir-127: chr18: 64385295-64385408 [+]
• oar-mir-432: chr18: 64386792-64386881 [+]
• oar-mir-136: chr18: 64386976-64387067 [+]

Database links

• miRBase Tracker:MI0016914

Mature sequence oar-miR-433-5p

• Accession: MIMAT0019241
• Sequence: 21 - uacggugagccugucauuguuca - 43
• Deep sequencing: 4 reads, 4 experiments
• Evidence: experimental; Illumina [1]

Mature sequence oar-miR-433-3p

• Accession: MIMAT0019242
• Sequence: 73 - aucaugaugggcuccucggugu - 94
• Deep sequencing: 654 reads, 13 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).