Stem-loop oar-mir-411a

Accession

MI0016918

Description

Ovis aries oar-mir-411a precursor miRNA

Gene family

MIPF0000126; mir-379

Literature search

3 open access papers mention oar-mir-411a
(15 sentences)

Sequence

3998 reads, 694 reads per million, 13 experiments

ccccagccucuguccucggcgucccugugugguacucggagagAUAGUAGACCGUAUAGCGUACGcuuuaucugugacgUAUGUAACACGGUCCACUAACccucaguaucaaauccguccucgag
..............(((((.(.(......(((((((..(((.(.((((.((((((...((((((((.........).)))))))...)))))).)))).).)))))))))).....).).)))))

Structure

ccccagccucuguc     c u ccugug       cg   a A    A      AUA       - uuu 
              cucgg g c      ugguacu  gag g UAGU GACCGU   GCGUACG c   a
              ||||| | |      |||||||  ||| | |||| ||||||   ||||||| |   u
              gagcu c g      acuauga  cuc C AUCA CUGGCA   UGUAUgc g   c
--------------     c u -ccuaa       --   c A    C      CAA       a ugu 

Annotation confidence Not enough data

Genome context

chr18: 64522514-64522638 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from oar-mir-411a

Mature oar-miR-411a-5p

• Accession: MIMAT0019249
• Description: Ovis aries oar-miR-411a-5p mature miRNA
• Sequence: 44 - AUAGUAGACCGUAUAGCGUACG - 65
• Evidence: experimental ; Illumina [1]

Mature oar-miR-411a-3p

• Accession: MIMAT0019250
• Description: Ovis aries oar-miR-411a-3p mature miRNA
• Sequence: 80 - UAUGUAACACGGUCCACUAAC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662