Stem-loop oar-mir-323a

Accession

MI0016923

Description

Ovis aries oar-mir-323a precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

2738 reads, 1108 reads per million, 13 experiments

cugcugcuugguacuuggagagAGGUGGUCCGUGGCGCGUUCGcuuuauuuauggcgCACAUUACACGGUCGACCUCUuugcgguaucuaaucccgccuug
.........((((((.(.((((((((.(.(((((..(.((.((((........)))).)).)..))))).).)))))))).))))))).............

Structure

----cugcugcuu      u g        G U     GC C  U    uua 
             gguacu g agagAGGU G CCGUG  G GU CGcu   u
             |||||| | |||||||| | |||||  | || ||||    
             cuaugg c uuUCUCCA C GGCAC  U CA gcgg   u
guuccgcccuaau      - g        G U     AU A  C    uau 

Annotation confidence High

Genome context

chr18: 64524877-64524977 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from oar-mir-323a

Mature oar-miR-323a-5p

• Accession: MIMAT0019259
• Description: Ovis aries oar-miR-323a-5p mature miRNA
• Sequence: 23 - AGGUGGUCCGUGGCGCGUUCG - 43
• Evidence: experimental ; Illumina [1], cloned [2]

Mature oar-miR-323a-3p

• Accession: MIMAT0019260
• Description: Ovis aries oar-miR-323a-3p mature miRNA
• Sequence: 58 - CACAUUACACGGUCGACCUCU - 78
• Evidence: experimental ; Illumina [1], cloned [2]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662


2. PubMed ID: 23269700
   MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
   "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
   "Physiol Genomics (2013) 45:151-161