miRBase entry: oar-mir-543

Stem-loop oar-mir-543


Accession
MI0016929
Description
Ovis aries oar-mir-543 precursor miRNA
Gene family
MIPF0000110; mir-329

Literature search
1 open access papers mention oar-mir-543
(1 sentences)

Sequence

500 reads, 156 reads per million, 13 experiments
gcugagcugccgaaugauccugACCUGUGGUGCUUAAGGAGaaguugcccgugucuuuuucgcuuuauaugugacgAAACAUUCGCGGUGCACUUCUUUuucaguauccaauucagccucgaa
((......)).....((..((((..((.((((((.((((((((((.(((((((....((((((.........).)))))....))))).)))))))))))).))))))))..))))..))...

Structure
gcugagcugccgaau  uc    CC  U      U          u  -     ucuu     - uuu 
               ga  cugA  UG GGUGCU AAGGAGaagu gc ccgug    uuucg c   a
               ||  ||||  || |||||| |||||||||| || |||||    ||||| |   u
               cu  gacu  ac cuauga uuUUUCUUCA CG GGCGC    AAAgc g   a
------------aag  cc    ua  -      c          -  U     UUAC     a ugu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr18: 64531404-64531526 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from oar-mir-543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-543-5p

Accession MIMAT0019271
Description Ovis aries oar-miR-543-5p mature miRNA
Sequence 23 - ACCUGUGGUGCUUAAGGAG - 41
Evidence experimental
Illumina [1]

Mature oar-miR-543-3p

Accession MIMAT0019272
Description Ovis aries oar-miR-543-3p mature miRNA
Sequence 77 - AAACAUUCGCGGUGCACUUCUUU - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662