Stem-loop oar-mir-3958

Accession

MI0016931

Description

Ovis aries oar-mir-3958 precursor miRNA

Literature search

1 open access papers mention oar-mir-3958
(1 sentences)

Sequence

2472 reads, 620 reads per million, 13 experiments

cuggucugagauguucgaaaggAGGUUGUCCGUGAUGUAUUUGCuuuauuuguggcAGAUAUUGCACGGUUGAUCUCUuuucuucaucaaaugccuucuugaag
..(((.(..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..))))..).))).........

Structure

-------cu   c ga    uuc           GU     AU         uua 
         ggu u  gaug   gaaaggAGGUU  CCGUG  GUAUUUGCu   u
         ||| |  ||||   |||||||||||  |||||  |||||||||    
         ccg a  cuac   cuuuUCUCUAG  GGCAC  UAUAGAcgg   u
gaaguucuu   u aa    -uu           UU     GU         ugu 

Annotation confidence Not enough data

Genome context

chr18: 64534803-64534906 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from oar-mir-3958

Mature oar-miR-3958-5p

• Accession: MIMAT0019275
• Description: Ovis aries oar-miR-3958-5p mature miRNA
• Sequence: 23 - AGGUUGUCCGUGAUGUAUUUGC - 44
• Evidence: experimental ; Illumina [1]

Mature oar-miR-3958-3p

• Accession: MIMAT0019276
• Description: Ovis aries oar-miR-3958-3p mature miRNA
• Sequence: 57 - AGAUAUUGCACGGUUGAUCUCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662