miRBase entry: oar-mir-654

Stem-loop oar-mir-654


Accession
MI0016935
Description
Ovis aries oar-mir-654 precursor miRNA
Gene family
MIPF0000409; mir-654


Sequence

gagcccccaaccuggguuaguggAAAGGUGGUGGGCUGCGGAGCAUGugcuuccuucgcgucaUAUGUCUGCUGACCAUCACCUUUAgagcccucucgcugagga
.(((((.......))))).((..(((((((((((...(((((.(((((((.........).)))))))))))...)))))))))))...))((((.....)))).

Structure
gagcccccaaccuggguua  -gg           GCU     G      - uuc 
                   gu   AAAGGUGGUGG   GCGGA CAUGug c   c
                   ||   |||||||||||   ||||| |||||| |   u
                   cg   UUUCCACUACC   CGUCU GUAUac g   u
-----aggagucgcucucc  agA           AGU     -      u cgc 


Annotation confidence Not enough data
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Genome context
chr18: 64538374-64538478 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from oar-mir-654
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-654-5p

Accession MIMAT0019282
Description Ovis aries oar-miR-654-5p mature miRNA
Sequence 24 - AAAGGUGGUGGGCUGCGGAGCAUG - 47
Evidence experimental
Illumina [1]

Mature oar-miR-654-3p

Accession MIMAT0019283
Description Ovis aries oar-miR-654-3p mature miRNA
Sequence 64 - UAUGUCUGCUGACCAUCACCUUUA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662