Stem-loop oar-mir-539

Accession

MI0016942

Description

Ovis aries oar-mir-539 precursor miRNA

Literature search

1 open access papers mention oar-mir-539
(1 sentences)

Sequence

8491 reads, 12.0 reads per million, 122 experiments

cacgucgcuaucucauacuugaGGAGAAAUUAUCCUUGGUGUGUUcacuuuauuugggaugAAUCAUACAAGGACAAUUUCUUUuugaguaucaaauccugccucggcgg
..............(((((((((((((((((.((((((.(((((((((((.....))).)))).)))))))))).)))))))))))))))))......((((....))))

Structure

----cacgucgcuaucuc                 A      G    -    -   u 
                  auacuugaGGAGAAAUU UCCUUG UGUG UUca cuu a
                  ||||||||||||||||| |||||| |||| |||| ||| u
                  uaugaguuUUUCUUUAA AGGAAC AUAC AAgu ggg u
ggcggcuccguccuaaac                 C      -    U    a   u 

Annotation confidence High

Genome context

chr18: 64543862-64543971 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from oar-mir-539

Mature oar-miR-539-5p

• Accession: MIMAT0019296
• Description: Ovis aries oar-miR-539-5p mature miRNA
• Sequence: 23 - GGAGAAAUUAUCCUUGGUGUGUU - 45
• Evidence: experimental ; Illumina [1]

Mature oar-miR-539-3p

• Accession: MIMAT0019297
• Description: Ovis aries oar-miR-539-3p mature miRNA
• Sequence: 62 - AAUCAUACAAGGACAAUUUCUUU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662