miRBase entry: oar-mir-487a

Stem-loop oar-mir-487a


Accession
MI0016946
Description
Ovis aries oar-mir-487a precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention oar-mir-487a
(4 sentences)

Sequence

421 reads, 175 reads per million, 13 experiments
guuagccuuugguacuugaagaGUGGCUAUCCCUGCUGUGUUCGcuguauuuaugacgaAUCAUACAGGGACAUCCAGUUUuucaguaucaaauacugcucug
..(((..(((((((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).)))))))))..))).....

Structure
---gu   cc         u     G   CUA      C    -    - ugu 
     uag  uuugguacu gaaga UGG   UCCCUG UGUG UUCG c   a
     |||  ||||||||| ||||| |||   |||||| |||| |||| |   u
     guc  aaacuauga uuUUU ACC   AGGGAC AUAC Aagc g   u
gucuc   au         c     G   UAC      -    U    a uau 


Annotation confidence High
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Genome context
chr18: 64548818-64548920 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from oar-mir-487a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-487a-5p

Accession MIMAT0019304
Description Ovis aries oar-miR-487a-5p mature miRNA
Sequence 23 - GUGGCUAUCCCUGCUGUGUUCG - 44
Evidence experimental
Illumina [1]

Mature oar-miR-487a-3p

Accession MIMAT0019305
Description Ovis aries oar-miR-487a-3p mature miRNA
Sequence 60 - AUCAUACAGGGACAUCCAGUUU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662